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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs9309473 1 rs2140195 chr2:73702344 ALMS1P chr2:73872046-73912692:+ 0.57 4.75 7.32E-6 Metabolite levels
THYM cis rs1499614 1 rs2141924 chr7:66186246 CCT6P1 chr7:65216092-65228661:+ 0.59 4.86 4.58E-6 Gout
THYM cis rs2143950 1 rs2143950 chr14:35572357 KIAA0391 chr14:35591776-35786673:+ 0.32 4.14 7.59E-5 Atopic dermatitis
THYM cis rs2143950 1 rs2143950 chr14:35572357 PPP2R3C chr14:35554679-35591679:- 0.27 4.99 2.76E-6 Atopic dermatitis
THYM cis rs9457247 1 rs2149085 chr6:167371110 RNASET2 chr6:167343008-167412795:- 0.45 7.24 1.15E-10 Crohn's disease
THYM cis rs9457247 1 rs2149090 chr6:167372764 RNASET2 chr6:167343008-167412795:- 0.47 7.83 7.0E-12 Crohn's disease
THYM cis rs9457247 1 rs2149091 chr6:167372786 RNASET2 chr6:167343008-167412795:- 0.47 7.83 7.0E-12 Crohn's disease
THYM cis rs4924935 1 rs2158100 chr17:18811479 FAM18B chr17:18684582-18710026:+ 0.27 4.63 1.16E-5 Pancreatic cancer
THYM cis rs3820928 1 rs2163041 chr2:227772480 RHBDD1 chr2:227700773-227861591:+ -0.31 -4.56 1.54E-5 Pulmonary function
THYM cis rs2564921 1 rs2163167 chr3:53131772 RFT1 chr3:53122503-53164470:- -0.44 -4.8 5.86E-6 Height
THYM cis rs1577917 1 rs2166663 chr6:86593896 SNHG5 chr6:86386726-86388451:- -0.57 -7.62 1.9E-11 Response to antipsychotic treatment
THYM cis rs4372836 1 rs2169748 chr2:28957753 TRMT61B chr2:29072690-29093175:- 0.52 4.15 7.22E-5 Body mass index
THYM cis rs10935120 1 rs2177601 chr3:134245434 ANAPC13 chr3:134196547-134204865:- -0.59 -8.13 1.58E-12 Height
THYM cis rs10935120 1 rs2177601 chr3:134245434 CEP63 chr3:134204575-134293852:+ -0.41 -5.87 6.33E-8 Height
THYM cis rs2243480 1 rs2177703 chr7:65391717 CCT6P1 chr7:65216092-65228661:+ 0.67 4.9 3.88E-6 Diabetic kidney disease